Benchmarking: FVCOM - Revision history

K mouza: /* Load mvapich and intel compilers */

2015-07-27T10:24:46Z

Load mvapich and intel compilers

K mouza: /* Compiling FVCOM */

2015-07-15T09:21:04Z

Compiling FVCOM

K mouza: /* Compiling FVCOM */

2015-07-15T09:18:57Z

Compiling FVCOM

K mouza: /* Compiling FVCOM */

2015-07-15T09:17:45Z

Compiling FVCOM

K mouza: /* Compiling GOTM */

2015-07-15T09:17:13Z

Compiling GOTM

K mouza at 08:24, 15 July 2015

2015-07-15T08:24:50Z

K mouza at 14:47, 14 July 2015

2015-07-14T14:47:31Z

K mouza: /* Compile and Install HDF5 library */

2015-07-14T14:46:21Z

Compile and Install HDF5 library

K mouza: /* Compile and install netCDF library */

2015-07-14T14:45:37Z

Compile and install netCDF library

K mouza at 10:05, 14 July 2015

2015-07-14T10:05:28Z

← Older revision		Revision as of 10:24, 27 July 2015
Line 1:		Line 1:
−	== Load ~~mvapich~~ and ~~intel compilers~~ ==	+	== Load Intel compilers and Intel-MPI ==

	<syntaxhighlight>		<syntaxhighlight>

← Older revision		Revision as of 09:21, 15 July 2015
Line 90:		Line 90:
	CC = mpiicc		CC = mpiicc
	</syntaxhighlight>		</syntaxhighlight>
		+
		+	== Running FVCOM ==

@@ Line 71: / Line 71: @@
 Change the following lines in make.inc file:
 <syntaxhighlight>
-TOPDIR =  /home/k_mouza/PML-Benchmarks/Sample-Code/FVCOM-f    irst/src/FVCOM_source
+TOPDIR =  /home/k_mouza/PML-Benchmarks/Sample-Code/FVCOM/src/FVCOM_source
 ...
 LIBDIR =  -L$(INSTALLDIR)/lib -L/home/k_mouza/netcdf-C-4.3/lib -L/home/k_mouza/netcdf-fortran-4.4/lib -L/home/k_mouza/netcdf-fortran-4.4/lib
@@ Line 79: / Line 79: @@
 IOINCS =  -I/home/k_mouza/netcdf-C-4.3/include
 ...
-GOTMLIB   = -L$(TOPDIR)/../gotm-4.0.0/lib/IFORT/ -lturbulenc    e_prod -lutil_prod -lmeanflow_prod
+GOTMLIB   = -L$(TOPDIR)/../gotm-4.0.0/lib/IFORT/ -lturbulence_prod -lutil_prod -lmeanflow_prod
 GOTMINCS  = -I$(TOPDIR)/../gotm-4.0.0/modules/IFORT/
 ...
-CPP      = cpp -I/cm/shared/apps/intel/mpi/4.1.3.049/include64/ -I/    home/k_mouza/netcdf-C-4.3/include -I/home/k_mouza/netcdf-fortran-4.4/include
+CPP      = cpp -I/cm/shared/apps/intel/mpi/4.1.3.049/include64/ -I/home/k_mouza/netcdf-C-4.3/include -I/home/k_mouza/netcdf-fortran-4.4/include
 COMPILER = -DIFORT
 FC       = mpiifort
 DEBFLGS  =
-OPT      = -O3 -no-prec-div -I/cm/shared/apps/intel/mpi/4.1.3.049/i    nclude64 -L/cm/shared/apps/intel/mpi/4.1.3.049/lib64
+OPT      = -O3 -no-prec-div -I/cm/shared/apps/intel/mpi/4.1.3.049/include64 -L/cm/shared/apps/intel/mpi/4.1.3.049/lib64
 CLIB     =
 CC       = mpiicc
 </syntaxhighlight>

@@ Line 64: / Line 64: @@
 <syntaxhighlight>
 cd FVCOM/src/FVCOM_source
-vim make.inc
+vim make.inc  # SEE BELOW FOR CHANGES
 make -j10
 cp fvcom ../../pml-irish-sea/run/bin/

@@ Line 58: / Line 58: @@
 ...
 LDFLAGS         += -L$(NETCDFLIBDIR) -L/home/k_mouza/netcdf-C-4.3/lib/
 </syntaxhighlight>

@@ Line 2: / Line 2: @@
 <syntaxhighlight>
-module load mvapich2/intel/64
+module load intel-mpi/64/4.1.3/049
 module load intel/compiler/64/14.0
 module load intel/mkl/64/11.1
@@ Line 13: / Line 13: @@
 tar xzf hdf5-1.8.15-patch1.tar.gz
 cd hdf5-1.8.15-patch1
-CC=mpicc FC=mpif90 ./configure --prefix=/home/k_mouza/hdf5-mvapich-intel --enable-fortran --enable-parallel
+CC=mpiicc FC=mpiifort ./configure --prefix=/home/k_mouza/hdf5 --enable-fortran --enable-parallel
 make -j10
 make install
@@ Line 27: / Line 27: @@
 tar xzf netcdf-4.3.3.1.tar.gz
 cd netcdf-4.3.3.1
-CC=mpicc FC=mpif90 CPPFLAGS=-I/home/k_mouza/libraries/hdf5-mvapich-intel/include/ LDFLAGS=-L/home/k_mouza/libraries/hdf5-mvapich-intel/lib/ ./configure --prefix=/home/k_mouza/libraries/netcdf_C_4.3-mvapich-intel
+CC=mpiicc FC=mpiifort CPPFLAGS=-I/home/k_mouza/hdf5/include/ LDFLAGS=-L/home/k_mouza/hdf5/lib/ ./configure --prefix=/home/k_mouza/netcdf-C-4.3
 make -j10
 make install
@@ Line 34: / Line 34: @@
 tar xzf netcdf-fortran-4.4.2.tar.gz
 cd netcdf-fortran-4.4.2
-CC=mpicc FC=mpif90 FCFLAGS=-I/home/k_mouza/libraries/hdf5-mvapich-intel/include/ LDFLAGS=-L/home/k_mouza/libraries/hdf5-mvapich-intel/lib/ CPPFLAGS=-I/home/k_mouza/libraries/netcdf_C_4.3-mvapich-intel/include/ ./configure --prefix=/home/k_mouza/libraries/netcdf-fortran-4.4-mvapich-intel
+CC=mpiicc FC=mpiifort FCFLAGS=-I/home/k_mouza/hdf5/include/ LDFLAGS=-L/home/k_mouza/hdf5/lib/ CPPFLAGS=-I/home/k_mouza/netcdf-C-4.3/include/ ./configure --prefix=/home/k_mouza/netcdf-fortran-4.4
 make -j10
 make install

← Older revision		Revision as of 14:47, 14 July 2015
Line 1:		Line 1:
		+	== Load mvapich and intel compilers ==
		+
		+	<syntaxhighlight>
		+	module load mvapich2/intel/64
		+	module load intel/compiler/64/14.0
		+	module load intel/mkl/64/11.1
		+	</syntaxhighlight>
		+
	== Compile and Install HDF5 library ==		== Compile and Install HDF5 library ==