http://wiki.define-technology.com/mediawiki-1.35.0/index.php?action=history&feed=atom&title=Benchmarking%3A_IOR 2026-05-04T18:53:45Z Revision history for this page on the wiki MediaWiki 1.35.0 http://wiki.define-technology.com/mediawiki-1.35.0/index.php?title=Benchmarking:_IOR&diff=2044&oldid=prev 2013-02-27T15:16:22Z

<p></p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:16, 27 February 2013</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Download from: http://sourceforge.net/projects/ior-sio/ (wget http://downloads.sourceforge.net/project/ior-sio/IOR%20latest/IOR-2.10.3/IOR-2.10.3.tgz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fior-sio%2F&amp;ts=1361978337&amp;use_mirror=switch)</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Untar IOR-2.10.3.tar.gz and cd into the created dir.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Untar IOR-2.10.3.tar.gz and cd into the created dir.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> </table>

David http://wiki.define-technology.com/mediawiki-1.35.0/index.php?title=Benchmarking:_IOR&diff=852&oldid=prev 2012-07-25T09:10:43Z

<p></p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:10, 25 July 2012</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Untar IOR-2.10.<del class="diffchange diffchange-inline">1</del>.tar.gz and cd into the created dir.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Untar IOR-2.10.<ins class="diffchange diffchange-inline">3</ins>.tar.gz and cd into the created dir.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Change the first two lines in the LINUX SETTINGS section of the file:  </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Change the first two lines in the LINUX SETTINGS section of the file:  </div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;syntaxhighlight&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;syntaxhighlight&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">vim ../</del>IOR-2.10.1/src/C/Makefile.config</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">vi </ins>IOR-2.10.1/src/C/Makefile.config</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/syntaxhighlight&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/syntaxhighlight&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l16" >Line 16:</td> <td colspan="2" class="diff-lineno">Line 16:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>To compile and create the IOR executable; run:</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>To compile and create the IOR executable; run:</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;syntaxhighlight&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;syntaxhighlight&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[viglen@headnode <del class="diffchange diffchange-inline">IOR-2.10.1</del>]$ <del class="diffchange diffchange-inline">gmake </del>mpiio  </div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[viglen@headnode <ins class="diffchange diffchange-inline">C</ins>]$ <ins class="diffchange diffchange-inline">make </ins>mpiio  </div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">(cd ./src/C &amp;&amp; gmake mpiio)</del></div></td><td colspan="2"> </td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">gmake[1]: Entering directory `/home/viglen/scratch/IOR-2.10.1/src/C&#039;</del></div></td><td colspan="2"> </td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>mpicc -g -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -c IOR.c</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>mpicc -g -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -c IOR.c</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>mpicc -g -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -c utilities.c</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>mpicc -g -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -c utilities.c</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l29" >Line 29:</td> <td colspan="2" class="diff-lineno">Line 27:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> aiori-POSIX.o aiori-MPIIO.o aiori-noHDF5.o aiori-noNCMPI.o \</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> aiori-POSIX.o aiori-MPIIO.o aiori-noHDF5.o aiori-noNCMPI.o \</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> -lm  </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> -lm  </div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">gmake[1]: Leaving directory `/home/viglen/scratch/IOR-2.10.1/src/C&#039;</del></div></td><td colspan="2"> </td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[viglen@headnode IOR-2.10.1]$ file src/C/IOR</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[viglen@headnode IOR-2.10.1]$ file src/C/IOR</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>src/C/IOR: ELF 64-bit LSB executable, AMD x86-64, version 1 (SYSV), for GNU/Linux 2.6.9, dynamically linked (uses shared libs), for GNU/Linux 2.6.9, not stripped</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>src/C/IOR: ELF 64-bit LSB executable, AMD x86-64, version 1 (SYSV), for GNU/Linux 2.6.9, dynamically linked (uses shared libs), for GNU/Linux 2.6.9, not stripped</div></td></tr> </table>

David http://wiki.define-technology.com/mediawiki-1.35.0/index.php?title=Benchmarking:_IOR&diff=851&oldid=prev 2012-07-25T09:03:09Z

<p>Created page with &quot;Untar IOR-2.10.1.tar.gz and cd into the created dir. Change the first two lines in the LINUX SETTINGS section of the file: &lt;syntaxhighlight&gt; vim ../IOR-2.10.1/src/C/Makefile.config &lt;/...&quot;</p> <p><b>New page</b></p><div>Untar IOR-2.10.1.tar.gz and cd into the created dir.<br /> <br /> <br /> Change the first two lines in the LINUX SETTINGS section of the file: <br /> &lt;syntaxhighlight&gt;<br /> vim ../IOR-2.10.1/src/C/Makefile.config<br /> &lt;/syntaxhighlight&gt;<br /> <br /> Set the CC compiler to your preferred MPI<br /> &lt;syntaxhighlight&gt;<br /> # default<br /> # CC.Linux = mpiicc<br /> CC.Linux = /opt/openmpi/gnu/gin/mpicc<br /> &lt;/syntaxhighlight&gt;<br /> <br /> To compile and create the IOR executable; run:<br /> &lt;syntaxhighlight&gt;<br /> [viglen@headnode IOR-2.10.1]$ gmake mpiio <br /> (cd ./src/C &amp;&amp; gmake mpiio)<br /> gmake[1]: Entering directory `/home/viglen/scratch/IOR-2.10.1/src/C&#039;<br /> mpicc -g -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -c IOR.c<br /> mpicc -g -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -c utilities.c<br /> mpicc -g -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -c parse_options.c<br /> mpicc -g -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -c aiori-POSIX.c<br /> mpicc -c aiori-MPIIO.c<br /> mpicc -g -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -c aiori-noHDF5.c<br /> mpicc -g -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -c aiori-noNCMPI.c<br /> mpicc -o IOR IOR.o utilities.o parse_options.o \<br /> aiori-POSIX.o aiori-MPIIO.o aiori-noHDF5.o aiori-noNCMPI.o \<br /> -lm <br /> gmake[1]: Leaving directory `/home/viglen/scratch/IOR-2.10.1/src/C&#039;<br /> [viglen@headnode IOR-2.10.1]$ file src/C/IOR<br /> src/C/IOR: ELF 64-bit LSB executable, AMD x86-64, version 1 (SYSV), for GNU/Linux 2.6.9, dynamically linked (uses shared libs), for GNU/Linux 2.6.9, not stripped<br /> &lt;/syntaxhighlight&gt;<br /> <br /> Executable will be stored in the ../IOR-2.10.1/src/C directory.<br /> To run;<br /> &lt;syntaxhighlight&gt;<br /> ./IOR -vv -k -wWr -C -F -i4 -t 256k -b 10m -s574 -o /path/to-my/testfile <br /> <br /> mpirun -np 2 -hostlist &quot;comp00 comp01&quot; ./ior-pmpi -vv -t 256k -b 500m -o /mnt/lustre/iorfile<br /> <br /> # -vv verbose<br /> # -k keep files after test<br /> # -F one file per process<br /> # -i N number of iternations<br /> # -t N transfer size (256k, 1m, 1g) <br /> # -b N blocksize (must be multiple of transfer size, <br /> &lt;/syntaxhighlight&gt;<br /> <br /> Run just write or read tests:<br /> &lt;syntaxhighlight&gt;<br /> # write only test:<br /> mpirun -np 2 -hostlist &quot;comp00 comp01&quot; ./ior-pmpi -k -wW -F -t1m -b500m -o /mnt/lustre/iorfile<br /> <br /> # flush caches before read tests (as root);<br /> sync; echo 3 &gt; /proc/sys/vm/drop_caches<br /> <br /> # read only test, needs to have iorfiles in place from write with -k<br /> mpirun -np 2 -hostlist &quot;comp00 comp01&quot; ./ior-pmpi -k -rR -F -t1m -b500m -o /mnt/lustre/iorfile<br /> &lt;/syntaxhighlight&gt;</div>

David