Difference between revisions of "Benchmarking: AMBER 12"

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==Build==
 
==Build==
 
Serial Version
 
Serial Version
<syntaxhighlight>
+
<syntaxhighlight>./configure -noX11 intel
./configure -noX11 intel
+
make install</syntaxhighlight>
make install
 
</syntaxhighlight>
 
 
Single GPU Version
 
Single GPU Version
<syntaxhighlight>
+
<syntaxhighlight>export CUDA_HOME=/shared/apps/cuda/cuda-5.0
export CUDA_HOME=/shared/apps/cuda/cuda-5.0
+
./configure -noX11 -cuda intel</syntaxhighlight>
./configure -noX11 -cuda intel
 
</syntaxhighlight>
 
 
Multi GPU Version
 
Multi GPU Version
<syntaxhighlight>
+
<syntaxhighlight>module load mvapich2/1.8.1-intel-compilers
module load mvapich2/1.8.1-intel-compilers
+
./configure -noX11 -cuda -mpi intel</syntaxhighlight>
./configure -noX11 -cuda -mpi intel
 
</syntaxhighlight>
 

Revision as of 10:36, 7 March 2013

Requirements

  1. Cuda 5.0
  2. Intel Compilers

Build Environment

module load intel/compilers/13.0.1

export AMBERHOME=`pwd`

export CXX=icpc
export FC=ifort
export F90=ifort
export CC=icc

Build

Serial Version

./configure -noX11 intel
make install

Single GPU Version

export CUDA_HOME=/shared/apps/cuda/cuda-5.0
./configure -noX11 -cuda intel

Multi GPU Version

module load mvapich2/1.8.1-intel-compilers
./configure -noX11 -cuda -mpi intel