Difference between revisions of "Benchmarking: AMBER 12"

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#Intel Compilers
 
#Intel Compilers
 
==Software==
 
==Software==
Amber12 (amber12.tgz) is available on 10.0.0.220 @ software/hpc/nvidia_gpu <br>
+
Amber12 (amber12.tgz) is available on ''10.0.0.220'' @ ''software/hpc/nvidia_gpu'' <br>
 
Copy it over to the install location and untar it
 
Copy it over to the install location and untar it
 
  tar zxf amber12.tgz
 
  tar zxf amber12.tgz

Revision as of 10:52, 7 March 2013

Requirements

  1. Cuda 5.0
  2. Intel Compilers

Software

Amber12 (amber12.tgz) is available on 10.0.0.220 @ software/hpc/nvidia_gpu
Copy it over to the install location and untar it

tar zxf amber12.tgz
cd amber12

Build Environment

module load intel/compilers/13.0.1

export AMBERHOME=`pwd`

export CXX=icpc
export FC=ifort
export F90=ifort
export CC=icc

Build

Serial Version

./configure -noX11 intel
make install

Single GPU Version

export CUDA_HOME=/shared/apps/cuda/cuda-5.0
./configure -noX11 -cuda intel

Multi GPU Version

module load mvapich2/1.8.1-intel-compilers
./configure -noX11 -cuda -mpi intel